Open in a new window/tab

BrainStars: 1424341_s_at: Pcdha1

Affymetrix Probe set ID 1424341_s_at
Gene Name protocadherin alpha 1
protocadherin alpha 4
protocadherin alpha 6
protocadherin alpha 7
protocadherin alpha 5
protocadherin alpha 11
protocadherin alpha 10
protocadherin alpha 9
protocadherin alpha 3
protocadherin alpha 12
protocadherin alpha 2
protocadherin alpha 8
protocadherin alpha subfamily C, 1
protocadherin alpha subfamily C, 2
Gene Symbol Pcdha1 CNR CNRc1 CNRc2 Cnr1 Cnr2 Cnr3 Cnr4 Cnr5 Cnr6 Cnr7 Cnr8 Crnr1 Crnr2 Crnr3 Crnr4 Crnr5 Crnr6 Crnr7 Crnr8 Pcdha10 Pcdha11 Pcdha12 Pcdha13 Pcdha14 Pcdha2 Pcdha3 Pcdha4 Pcdha5 Pcdha6 Pcdha7 Pcdha8 Pcdha9 Pcdhac1 Pcdhac2 R75250 mKIAA0345 A830022B16Rik

BrainStars Expression at 51 brain regions

Expression graph Expression map
PDF files: Expression Graph, Expression Map

BrainStars classification of 48 brain regions by multi-state gene analysis

# States 2
Score -27.5452116185937
Multi-state expression graph Multi-state expression histogram Multi-state expression map
PDF files: Expression Graph, Expression Histogram, Expression Map

Other brain expression resources

Cross section images

ViBrism ABA expression energy
ViBrism ABA expression energy
The ViBrism cross section images (whole brain mode: beta version) were provided by the ViBrism team. A full 3-D model of the expression is available at their ViBrism site.
The ABA expression energy cross section images were obtained from the Allen Mouse Brain Atlas, Allen Instiute for Brain Science © 2008. Please refer to their original terms of use.

Links to other resources

Allen Brain Atlas Pcdha6
ViBrism AF464177
EMAGE Pcdha11 Pcdha12 Pcdha2 Pcdha3 Pcdha4 Pcdha7 Pcdha8 Pcdha9 Pcdhac1 Pcdhac2

BrainStars 1-D expression files

You can download BrainStars expression data in a table.
TSV format file BrainStars expression in a tab-separated values format
CSV format file BrainStars expression in a camma-separated values format

BrainStars 3-D expression files

You can download this entry's BrainStars expression data putting on 3-D mouse brain models.
VCAT format file BrainStars expression putting on a brain model.
The file can be viewed with a software, VCAT, downloadable from VCAD@RIKEN site.
XPR format file BrainStars expression putting on a Allen Reference Atlas brain model.
You can view the XPR file with the Brain Explorer software provided by the Allen Institute.

External links

Entrez GeneID 116731 12936 12937 12939 12941 12942 12943 192161 192163 192164 353234 353235 353236 353237
MGI ID MGI:2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982 2150982
Ensembl ENSMUSG00000007440 ENSMUSG00000079714
RefSeq Transcript NM_001003671 NM_001003672 NM_007766 NM_007767 NM_009957 NM_009959 NM_009960 NM_009961 NM_054072 NM_138661 NM_138662 NM_138663 NM_198117 NM_201243
RefSeq Protein NP_001003671 NP_001003672 NP_031792 NP_031793 NP_034087 NP_034089 NP_034090 NP_034091 NP_473413 NP_619602 NP_619603 NP_619604 NP_932785 NP_957695
Agilent ID A_51_P324950 A_52_P345548
Allen Brain Atlas Pcdha6
ViBrism AF464177
EMAGE Pcdha11 Pcdha12 Pcdha2 Pcdha3 Pcdha4 Pcdha7 Pcdha8 Pcdha9 Pcdhac1 Pcdhac2